PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family DBB
Protein Properties Length: 246aa    MW: 27542.6 Da    PI: 4.2781
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486910.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.3e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     C+ +e+  ++  C  ++  lC++C  e H        H++
  XP_004486910.1  4 QCDVCEKAAATVICCADEAALCAKCDIEVHAAnklaskHQR 44
                    7******99*********************65667777765 PP

2zf-B_box301e-095395238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    + ++C+ +++k++ +fC +++ l+C+dC +  H+       H+
  XP_004486910.1 53 KLPRCDICQDKPAFIFCVEDRALFCQDCDEPVHSAgslsanHQ 95
                    789***************************9996567777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.257147IPR000315B-box-type zinc finger
CDDcd000215.74E-6347No hitNo description
SMARTSM003366.7E-9447IPR000315B-box-type zinc finger
SMARTSM003362.0E-145299IPR000315B-box-type zinc finger
PROSITE profilePS501199.3435299IPR000315B-box-type zinc finger
PfamPF006436.6E-95396IPR000315B-box-type zinc finger
CDDcd000216.30E-85598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MKIQCDVCEK AAATVICCAD EAALCAKCDI EVHAANKLAS KHQRLLLQSL SNKLPRCDIC  60
QDKPAFIFCV EDRALFCQDC DEPVHSAGSL SANHQRLLAT GIRVAMSSNC AEDDEQTHID  120
PPDRNTQQVS LETPSQQVPN FTSSWVVDDL LEFADFESSD KKESMQFGEM EWFTNESLFG  180
EEFTQEAMAA AEVPQVPQLS VTHASNNFSS QRTSKSHMSN KKPRIELKQD DYYDDEDEYF  240
TVPDLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486910.10.0PREDICTED: B-box zinc finger protein 25-like
SwissprotQ9SID12e-91BBX25_ARATH; B-box zinc finger protein 25
TrEMBLG7IHV41e-140G7IHV4_MEDTR; Salt tolerance-like protein
STRINGGLYMA13G41980.11e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34383157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.17e-87salt tolerance homologue